Talks will be live streamed via Zoom directly to the BioC YouTube channel.
Keynote sessions are 35 min, Short talk sessions (four 10-min talks) are 50 min, Workshops are 45 min. Sessions during the same time slot will be run in parallel. All sessions include Q&A time.
All times are in Central European Time (CET). -6 hours = US Eastern Time Zone, -9 hours = US Pacific Time Zone, +7 hours = China Time Zone, +10 hours = Australian Time Zone. Time is presented in 24h format. Note March 13 is the start of Daylight Saving Time (Clock forward)
Monday and Tuesday, September 12-13, 2022
Pre-conference Carpentries Course
Wednesday, September 14, 2022
| Time | Session | Title | |
|---|---|---|---|
| 09:15 | Introduction | Bioconductor overview, and Code of Conduct. Intro to workshops, Icebreaker, Social/informal welcome | |
| 09:40 | Keynote | Dr. Shila Ghazanfar | |
| 10:25 | Break | ||
| 10:30 | Short talk | Short talk 1: Co-clustering of Spatially Resolved Transcriptomic Data. Andrea Sottosanti | |
| 10:40 | Short talk | Short talk 2: Simplified, strand aware and comprehensive splicing analysis using IntEREst (1.22.0). Ali Oghabian | |
| 10:50 | Short talk | Short talk 3: Differential embedding analysis of multi-condition single-cell datasets. Constantin Ahlmann-Eltze | |
| 11:00 | Coffee break | ||
| 11:30 | Short talk | Short talk 4: Clinical microbiome data science with MultiAssayExperiment. Tuomas Borman | |
| 11:40 | Short talk | Short talk 5: µSTASIS - Assessment of human microbiota stability across longitudinal samples. Pedro Sánchez-Sánchez | |
| 11:50 | Short talk | Short talk 6: OmicSHIELD: privacy-protected federated omic data analysis in multi-center studies with Bioconductor through DataSHIELD. Juan Ramon Gonzalez | |
| 12:00 | Short talk | Short talk 7: DepInfeR - A Bioconductor package for Inferring tumor-specific cancer dependencies through integrating ex-vivo drug response assays and drug-protein profiling. Junyan Lu | |
| 12:10 | Lunch | ||
| 13:25 | Workshop | Workshop: TBA, Erik Schliep | |
| 14:10 | Keynote | Dr. Julio Saez-Rodriguez | |
| 14:55 | Coffee break | ||
| 15:05 | Workshop | Workshop 1: The Spectra package: seamless integration of mass spectrometry data from different sources. Johannes Rainer | |
| 15:05 | Workshop | Workshop 2: benchdamic: benchmarking of differential abundance methods for microbiome data. Matteo Calgaro | |
| 15:05 | Workshop | Workshop 3: Tools for CITE-seq preprocessing. Helen Lindsay | |
| 15:50 | Poster session | Evotec poster session and coffee break | |
| 16:55 | Workshop | Workshop 4: Single-cell multi-modal data handling in R/Bioconductor. Dario Righelli | |
| 16:55 | Workshop | Workshop 5: Differential abundance analysis for label-free mass spectrometry-based proteomics. Laurent Gatto | |
| 16:55 | Workshop | Workshop 6: simplifyEnrichment: A Bioconductor Package for Clustering and Visualizing Functional Enrichment Results. Zuguang Gu | |
| 17:40 | End of Day 1 | ||
| 19:00 | Dinner | Conference dinner |
Thursday, September 15, 2022
| Time | Session | Title | |
|---|---|---|---|
| 09:15 | Keynote | Dr. Judith Zaugg | |
| 10:00 | Coffee break | ||
| 10:10 | Short talk | Short talk 8: Smooth epigenomics data analysis and visualisation with Bioconductor (or: an ode to Rle). Pierre-Luc Germain | |
| 10:20 | Short talk | Short talk 9: MethQuant: A package providing entropy-based measures for quantifying patterns of DNA methylation heterogeneity in (single-cell) bisulfite sequencing data. Emanuel Sonder | |
| 10:30 | Short talk | Short talk 10: DeeDee - Evaluating, Visualizing, and Integrating Results from Differential Expression Analysis Workflows. Federico Marini | |
| 10:40 | Short talk | Short talk 11: Analysing multiplexed assays of variant effects with mutscan. Michael Stadler | |
| 10:50 | Short talk | Short talk 12: Joint modeling of rare variant genetic effects using deep learning and data-driven burden scores. Brian Clarke | |
| 11:00 | Coffee break | ||
| 11:30 | Short talk | Short talk 13: spillR: Causal Modelling of Spillover in Mass Cytometry. Marco Guazzini | |
| 11:40 | Short talk | Short talk 14: Multi-omic integration with cosmosR and ocEAn to study cross-talks between signalling and metabolism in diseases. Aurelien Dugourd | |
| 11:50 | Short talk | Short talk 15: A new principled approach for single-cell proteomics data analysis. Laurent Gatto | |
| 12:00 | Short talk | Short talk 16: Analyzing hydrogen-deuterium exchange mass-spectrometry data in R. Oliver Crook | |
| 12:10 | Short talk | Short talk 17: CTexploreR, a package to explore CT genes. Axelle Loriot | |
| 12:20 | Lunch | ||
| 13:40 | Workshop | Workshop 7: Inference and Analysis of Synteny Networks with syntenet. Fabrício Almeida-Silva | |
| 13:40 | Workshop | Workshop 8: Single-cell based spatial analysis and visualization of highly multiplexed imaging data. Nils Eling | |
| 14:25 | Coffee break | ||
| 14:35 | Keynote | Dr. Michael Dorrity | |
| 15:20 | Poster session | GHGA poster session and coffee break | |
| 16:20 | Short talk | Short talk 19: DifferentialRegulation: a novel approach to identify differentially regulated genes. Simone Tiberi | |
| 16:30 | Short talk | Short talk 20: Analysis of transposable elements in R and Bioconductor with atena. Beatriz Calvo-Serra | |
| 16:40 | Short talk | Short talk 21: Inclusive instruction in cancer data science: Authoring and deployment with yes4cure. Alexandru Mahmoud | |
| 16:50 | Short talk | Short talk 22: miaSim: a time series simulation R package for microbial ecology. Yagmur Simsek | |
| 17:00 | Discussion | Discussion and plan for Friday |
Friday, September 16, 2022
| Time | Session | Title | |
|---|---|---|---|
| 09:00 | Keynote | Dr. Björn Grüning | |
| 09:45 | Flashtalks | ||
| 10:30 | Coffee break | ||
| 11:00 | Special session | Birds-of-a-Feather, Three parallel sessions | |
| 12:00 | Lunch | ||
| 13:00 | Special session | Birds-of-a-Feather, Three parallel sessions | |
| 14:30 | Coffee break | ||
| 14:50 | End of Day 3 | Closing remarks |
Poster information
The poster format should be A0, portrait. You need to bring Powerstrips / Posterstrips with you to bond your poster to the poster board.